ANALYSIS
analysis/compute info. [help]
program j_ortholog_clusters 2.0
algorithm j_ortholog_clusters
description Jaccard Orthologous clusters (multiple genomes)
load date 2013-08-26 09:44:00
PARAMETERS
parameters used to run the analysis [help]
parameter name parameter value
bin_dir /home/unix/aspdb/software/ergatis/bin
classification clustering
component_config /home/unix/aspdb/projects/test/workflow/runtime/j_ortholog_clusters/162_default/j_ortholog_clusters.default.final.config
component_name j_ortholog_clusters
component_xml /home/unix/aspdb/projects/test/workflow/runtime/j_ortholog_clusters/162_default/component.xml
componenturl /home/unix/aspdb/projects/test/workflow/runtime/muscle/162_j_ortholog_clusters/component.xml
debug 0
ergatis_dir /home/unix/aspdb/software/ergatis
fasta_nr_peptide /mnt/staging/db/panda/AllGroup/AllGroup.fasta
group_count 150
hmm_all /mnt/staging/db/coding_hmm/coding_hmm.lib.bin
lib_dir /home/unix/aspdb/software/ergatis/lib
match_bsml_file_list /home/unix/aspdb/projects/test/output_repository/wu-blastp/162_default/wu-blastp.bsml.list
max_multi_alignment 100
nodistrib 0
output_directory /home/unix/aspdb/projects/test/output_repository/j_ortholog_clusters/162_default
output_token default
pipeline_token unnamed
pipeline_xml /home/unix/aspdb/projects/test/workflow/runtime/pipeline/162/pipeline.xml
pipelineid 162
pipelineurl /home/unix/aspdb/projects/test/workflow/runtime/pipeline/162/pipeline.xml
project test
project_config /home/unix/aspdb/projects/test/workflow/project.config
project_id_repository /home/unix/aspdb/projects/test/workflow/project_id_repository
pvalcut 1e-5
query_bsml_file_list /seq/aspergillus1/gustavo/projects/aspergillus/from_igs/jcrabtree/asp2_v9/all_orgs.asp2_v9.bsml.list
release_tag $Name$
repository_root /home/unix/aspdb/projects/test
revision $Revision: 4680 $
simple_repeat_lib /usr/local/devel/ANNOTATION/RepeatMasker20020713/Libraries/simple.lib
software_config /home/unix/aspdb/software/ergatis/software.config
template_xml /home/unix/aspdb/software/ergatis/docs/j_ortholog_clusters.xml
tmp_dir /home/unix/aspdb/scratch/test/j_ortholog_clusters/162_default
workflow_repository /home/unix/aspdb/projects/test/workflow/runtime/j_ortholog_clusters/162_default

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