ANALYSIS
analysis/compute info. [help]
program muscle $Name: $
algorithm muscle
description none
load date 2013-08-27 16:06:00
PARAMETERS
parameters used to run the analysis [help]
parameter name parameter value
bin_dir /home/unix/aspdb/software/ergatis/bin
bsml_output_list /home/unix/aspdb/projects/test/output_repository/muscle/167_default/muscle.bsml.list
classification alignment / multiple
component_config /home/unix/aspdb/projects/test/workflow/runtime/muscle/167_default/muscle.default.final.config
component_name muscle
component_xml /home/unix/aspdb/projects/test/workflow/runtime/muscle/167_default/component.xml
componenturl /home/unix/aspdb/projects/test/workflow/runtime/muscle/167_default/component.xml
compress_raw_output 1
debug 0
ergatis_dir /home/unix/aspdb/software/ergatis
fasta_nr_peptide /mnt/staging/db/panda/AllGroup/AllGroup.fasta
group_count 150
hmm_all /mnt/staging/db/coding_hmm/coding_hmm.lib.bin
input_extension fsa
input_file_list /seq/aspergillus1/gustavo/projects/aspergillus/from_igs/jcrabtree/asp2_v9/adding_big_4_alignment_to_sybil/cogs_fasta.list
iterator1 i1
iterator1_xml /home/unix/aspdb/software/ergatis/docs/muscle.i1.xml
lib_dir /home/unix/aspdb/software/ergatis/lib
nodistrib 0
output_directory /home/unix/aspdb/projects/test/output_repository/muscle/167_default
output_token default
pipeline_token unnamed
pipeline_xml /home/unix/aspdb/projects/test/workflow/runtime/pipeline/167/pipeline.xml
pipelineid 167
pipelineurl /home/unix/aspdb/projects/test/workflow/runtime/pipeline/167/pipeline.xml
project test
project_config /home/unix/aspdb/projects/test/workflow/project.config
project_id_repository /home/unix/aspdb/projects/test/workflow/project_id_repository
raw_output_list /home/unix/aspdb/projects/test/output_repository/muscle/167_default/muscle.raw.list
release_tag $Name: $
repository_root /home/unix/aspdb/projects/test
revision $Revision: 1.10 $
simple_repeat_lib /usr/local/devel/ANNOTATION/RepeatMasker20020713/Libraries/simple.lib
software_config /home/unix/aspdb/software/ergatis/software.config
template_xml /home/unix/aspdb/software/ergatis/docs/muscle.xml
tmp_dir /home/unix/aspdb/scratch/test/muscle/167_default
workflow_repository /home/unix/aspdb/projects/test/workflow/runtime/muscle/167_default

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