ANALYSIS
analysis/compute info. [help]
program jaccard $Name$
algorithm jaccard
description Jaccard clusters (single genome)
load date 2013-08-26 00:11:00
PARAMETERS
parameters used to run the analysis [help]
parameter name parameter value
bin_dir /home/unix/aspdb/software/ergatis/bin
classification clustering
component_config /home/unix/aspdb/projects/test/workflow/runtime/jaccard/162_default/jaccard.default.final.config
component_name jaccard
component_xml /home/unix/aspdb/projects/test/workflow/runtime/jaccard/162_default/component.xml
componenturl /home/unix/aspdb/projects/test/workflow/runtime/muscle/162_jaccard/component.xml
debug 0
ergatis_dir /home/unix/aspdb/software/ergatis
fasta_nr_peptide /mnt/staging/db/panda/AllGroup/AllGroup.fasta
group_count 150
hmm_all /mnt/staging/db/coding_hmm/coding_hmm.lib.bin
input_extension bsml
input_file_list /seq/aspergillus1/gustavo/projects/aspergillus/from_igs/jcrabtree/asp2_v9/all_orgs.asp2_v9.bsml.list
iterator1 i1
iterator1_xml /home/unix/aspdb/software/ergatis/docs/jaccard.i1.xml
lib_dir /home/unix/aspdb/software/ergatis/lib
linkscore .6
match_bsml_file_list /home/unix/aspdb/projects/test/output_repository/wu-blastp/162_default/wu-blastp.bsml.list
max_multi_alignment 30
nodistrib 0
output_directory /home/unix/aspdb/projects/test/output_repository/jaccard/162_default
output_token default
pidentity_cutoff 80
pipeline_xml /home/unix/aspdb/projects/test/workflow/runtime/pipeline/162/pipeline.xml
pipelineid 162
pipelineurl /home/unix/aspdb/projects/test/workflow/runtime/pipeline/162/pipeline.xml
project test
project_config /home/unix/aspdb/projects/test/workflow/project.config
project_id_repository /home/unix/aspdb/projects/test/workflow/project_id_repository
pvalcut 1e-5
release_tag $Name$
repository_root /home/unix/aspdb/projects/test
revision $Revision: 4680 $
simple_repeat_lib /usr/local/devel/ANNOTATION/RepeatMasker20020713/Libraries/simple.lib
software_config /home/unix/aspdb/software/ergatis/software.config
template_xml /home/unix/aspdb/software/ergatis/docs/jaccard.xml
tmp_dir /home/unix/aspdb/scratch/test/jaccard/162_default
workflow_repository /home/unix/aspdb/projects/test/workflow/runtime/jaccard/162_default

  AspGD comparative displays powered by Sybil.  
Return to AspGD
Send a Message to the AspGD Curators