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Welcome to the Aspergillus 20-way comparative database asp2_v8 powered by Sybil

introduction

This website is built on top of a Chado comparative database and provides a number of tools for analyzing and visualizing the data.

Sybil relies on precomputed searches-- primarily BLASTP searches and protein clustering analyses--the results of which are stored in the comparative database and queried as needed.

Here is a summary of where you can go from this page and how to move around Sybil:

Read the help page.
Click on the thumbnails below to generate visualizations of the data. From these visualizations you can drill down further by clicking on the features displayed in the images.
To find a specific gene use the "Search for genes/proteins" tool below.
You will find a summary of the analyses and organisms loaded at the bottom of the page
Click on the "help" link at the top-right of any section to get more information.
Click on the "AspGD" logo in the top-left corner of any page to return to this page.
For help or to report bugs use the e-mail link in the bottom-right corner of every page.

Note: This site has only been tested fully with the Mozilla Firefox browser.

Search for genes/proteins [help]

search for genes/proteins using keywords

--> enter one or more keywords (e.g., "histone", "deacetylase") separated by spaces and then hit return or click on "search". Valid SQL regular expressions are also usable such as "ORF0027[13]" and "ntsp[46]"

Sybil graphical displays

Sybil tables and lists

Aspergillus strains [help]

all organisms/genomes loaded into chado

organism	description
Aspergillus nidulans FGSC A4	Sequenced by the Broad Institute. Sequence and annotation obtained from CADRE on 26-Aug-2009. Gene models subsequently refined at AspGD by PASA alignment of RNA-Seq provided by Dr. Mark X. Caddick
Aspergillus versicolor	Sequenced by JGI. Sequence and GFF annotation downloaded from the JGI v1.0 download page on 15-Sep-2012.
Aspergillus sydowii	Sequenced by JGI. Sequence and GFF annotation downloaded from the JGI v1.0 download page on 15-Sep-2012.
Aspergillus flavus NRRL 3357	Sequenced by JCVI. Sequence and annotation downloaded from the Broad Institute Aspergillus download page on 23-Feb-2009. Gene models subsequently refined at AspGD by PASA alignment of A. oryzae ESTs.
Aspergillus oryzae RIB40/ATCC 42149	Sequenced by NITE, AIST, A. oryzae consortium. Sequence and annotation downloaded from the Broad Institute Aspergillus download page on 23-Feb-2009. Gene models subsequently refined at AspGD by PASA alignment of A. oryzae ESTs, RNA-Seq provided Dr. Kazuhiro Iwashita and publicly available RNA-Seq reads (Wang 2010, PMID:20392818) .
Aspergillus terreus NIH2624	Sequenced by the Broad Institute. Sequence and GFF annotation downloaded from the Broad Institute Aspergillus download page on 23-Feb-2009.
Aspergillus niger CBS 513.88	Sequenced by Gene Alliance for DSM. Sequence and GFF annotation downloaded from GenBank on 24-Feb-2009. Gene models subsequently refined at AspGD by PASA alignment of A. niger ATCC 1015 ESTs.
Aspergillus niger ATCC 1015	Sequenced by JGI. Sequence and GFF annotation downloaded from the JGI v3.0 download page on 27-Apr-2009. Gene models subsequently refined at AspGD by PASA alignment of A. niger ATCC 1015 ESTs.
Aspergillus acidus	Sequenced by JGI. Sequence and GFF annotation downloaded from the JGI v1.0 download page on 15-Sep-2012.
Aspergillus aculeatus ATCC16872	Sequenced by JGI. Sequence and GFF annotation downloaded from the JGI v1.1 download page on 06-Aug-2011.
Aspergillus carbonarius ITEM 5010	Sequenced by JGI. Sequence and GFF annotation downloaded from the JGI v3.0 download page on 06-Aug-201:1.
Aspergillus brasiliensis	Sequenced by JGI. Sequence and GFF annotation downloaded from the JGI v1.0 download page on 15-Sep-2012.
Aspergillus clavatus NRRL 1	Sequenced by JCVI. Sequence and GFF annotation downloaded from the Broad Institute Aspergillus download page on 23-Feb-2009.
Neosartorya fischeri NRRL 181	Sequenced by JCVI. Sequence and annotation downloaded from the Broad Institute Aspergillus download page on 23-Feb-2009.
Aspergillus fumigatus A1163	Sequenced by JCVI. Sequence and annotation downloaded from GenBank on 24-Feb-2009.
Aspergillus fumigatus Af293	Sequenced by JCVI/Sanger Institute/Institut Pasteur. Sequence and annotation downloaded from the Broad Institute Aspergillus download page on 23-Feb-2009.
Aspergillus glaucus	Sequenced by JGI. Sequence and GFF annotation downloaded from the JGI v1.0 download page on 14-Jan-2013.
Aspergillus tubingensis	Sequenced by JGI. Sequence and GFF annotation downloaded from the JGI v1.0 download page on 14-Jan-2013.
Aspergillus wentii	Sequenced by JGI. Sequence and GFF annotation downloaded from the JGI v1.0 download page on 14-Jan-2013.
Aspergillus zonatus	Sequenced by JGI. Sequence and GFF annotation downloaded from the JGI v1.0 download page on 14-Jan-2013.

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AspGD Copyright © 2008-2012 The Board of Trustees, Leland Stanford Junior University and Broad Institute of MIT and Harvard.
Permission to use the information contained in this database was given by the researchers/institutes who contributed or published the information. Users of the database are solely responsible for compliance with any copyright restrictions, including those applying to the author abstracts. Document from this server are provided "AS-IS" without any warranty, expressed or implied. How to cite AspGD.